CIA

Cluster Independent Annotation

Automatic signature-based annotation at single cell resolution.

Contents

• Overview
  • Description
  • Key Features
  • Documentation
  • Installation
  • Citation
• Installation
• API
  • cia package
    • cia.external module
    • cia.investigate module
    • cia.report module
    • cia.utils module
• Tutorial
  • Index
  • Introduction
  • CIA input
    • Gene signatures
    • AnnData
  • Signature score
    • Default score
    • Scaled score
  • Signature-based classification
    • Default classification
    • Classification with similarity threshold
  • Classification performance evaluation
  • Tips
    • Direct inspection of MSigDB signatures
    • Majority voting
    • Extraction of signatures from Differentially Expressed Genes
    • Alternative representation of cell group composition
  • Conclusion
  • References
• Release notes
  • Version 1.0.0a8
  • Version 1.0.0a7
  • Version 1.0.0a5
  • Version 1.0.0a4
  • Version 1.0.0a1
• License
• Authors